Reyes AV, Zhang C, Karunadasa SS, Shrestha R, Grimser TS, Byun D, Xu SL. (2025). Impact of alternative splicing on Arabidopsis proteome. bioRxiv. DOI: 10.1101/2024.02.29.582853.
This revised version expands the scope and incorporates new data compared to the previous one.
Pedersen R, Zhuang Y, Reyes AV, Xu SL, Shi X, Zheng Y. (2025) Reconstitution of lamin assembly on nuclear pore complex-containing membranes. bioRxiv. doi: 10.1101/2025.07.28.667287. Submitted.
Rui Y, Reyes AV, Grismer T, Abel N, Dwyer W, Ott T, Kieber JJ, Xu SL, Dinneny. (2025). Cellulose Synthase Complex and Remorin Nanodomains Mediate Stress Resilience Through Cell Wall-Plasma Membrane Attachments. bioRxiv: 10.1101/2025.08.01.664786. Submitted to Cell. under review.
Lindsay PL, Xu F, Liu L, Boumpas P, Robi J, Reyes AV, Je BI, Man J, Skopelitis S, Matsubayashi Y, Barleet M, McSteen P, Xu SL, Jackson D. (2025). Antagonistic interactions between CLAVATA receptors shape maize ear development. bioRxiv. DOI: 10.1101/2025.08.04.667500. Submitted.
Trinh CS*, Shrestha R*, Reyes AV, Conner WC, Liu G, Hu K, Xu SL. (2025). Mapping Architecture of Protein complexes in Arabidopsis using XL-MS. bioRxiv.2025. DOI:10.1101/2025.04.28.651104. Submitted to PNAS. In revision.
Shrestha R*, Reyes AR*, Carey S*, Karunadasa SS*, Zhai W, Byun D, Li W-D, Li J, Alert K, Cui H,Wang ZY, Xu SL. (2025) Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis. bioRxiv.2025. [Preprint] DOI: 10.1101/2025.01.04.631329. Submitted to Nat. Commun. In revision.
Grismer TS*, Karundasa SS*, Reyes AV*, Shrestha R, Byun D, Ni W, Xu SL. (2024) Workflow enhancement of TurboID-mediated proximity labeling for SPY signaling network mapping. bioRxiv. DOI:10.1101/2024.02.17.580820v1.
Tulin F, Aizezi Y, Reyes AV, Fujieda Y, Xu SL, Onishi M, Assaad F, Wang ZY. (2025). Control of mitotic entry by the plant-specific phosphatase BSL1 and cyclin-dependent kinase B. Nat. Plants. in press.
Zhang T, Klair A, Tang Z, Tripka A, Luo S, Reyes AV, Lee J, Gundran K, Noll SE, Wang X, Zare RN, Xu SL, Garay-Arroyo A, Wang C, Dickinson AJ. (2025). The metabolite itaconate is a transcriptional and posttranslational modulator of plant metabolism, development, and stress response. Sci Adv. doi: 10.1126/sciadv.adt7463
Karunadasa SS, Grimser TS, Zhai W, Reyes AV, Xu SL. (2025). Detection and Quantification of Biotinylated Proteins for TurboID-Based PL-MS in Arabidopsis. Book chapter. Methods in Molecular Biology. In press .
Fang YL, Tang Y, Xie PQ, Hsieh K, Nam H, Jia M, Reyes AV, Liu Y, Xu SL, Xu X, Gu Y. (2025). Nucleoporin PNET1 coordinates mitotic nuclear pore complex dynamics for rapid cell division. Nature Plants. DOI: 10.1038/s41477-025-01908-y.
Akers JF, Bothe A, Suh H, Jung C, Stolp Z, Ghosh T, Yan L, Wang Y, Grismer TS, Reyes AV, Hu T, Xu SL, Ban N, Kostova KK. (2025) ZNF574 is a Quality Control Factor For Defective Ribosome Biogenesis Intermediates. bioRxiv. DOI: 10.1101/2024.04.26.591394. Mol Cell. Accepted.
Powers J, Zhang X, Reyes AV, Zavaliev R, Xu SL, Dong XN. (2024) Next-generation mapping of salicylic acid signaling hub and transcriptional cascade. Mol. Plants. August 22, DOI: 10.1016/j.molp.2024.08.008.
Shrestha R, Karunadasa S, Grismer T, Reyes AV, Xu SL. (2024) SECRET AGENT O-GlcNAcylates hundreds of proteins involved in diverse cellular processes in Arabidopsis. Mol Cell Proteomics. 2024 Feb 7;:100732. doi: 10.1016/j.mcpro.2024.100732.
Chien YC, Reyes AV, Parka HL, Xu SL, and Yoon GM. (2023) Unveiling the proximal proteome of CTR1 through TurboID-mediated proximity labeling. Proteomics. DOI: 10.1002/pmic.202300212.
Bi Y*, Shrestha R*, Zhang ZZ*, Hsu CC, Reyes AV, Karunadasa S, Baker PR, Maynard JC, Liu Y, Hakimi A, Lopez-Ferrer D, Hassan T, Chalkley RJ, Xu SL#, Wang ZY#. (2023). SPY mediates O-fucose modification of hundreds of proteins and sugar-dependent growth in Arabidopsis. Plant Cell. (Breakthrough Report). (#co-corresponding author). DOI: 10.1093/plcell/koad023.
Davis JA, Reyes AV, Nitika N, Saha A, Wolfgeher DJ, Xu SL, Truman AW, Li B, Chakrabarti K. (2023). Proteomic analysis defines the interactome of telomerase in the protozoan parasite, Trypanosoma brucei. Front. Cell Dev. Biol. 10.3389/fcell.2023.1110423.
Reyes AV, Shrestha R, Baker PR, Chalkley RJ, Xu SL. (2022). Application of Parallel Reaction Monitoring in 15N labeled Samples for Quantification. Front. Plant Sci., DOI: 10.3389/fpls.2022.832585.
Shrestha R, Reyes AV, Baker PR, Wang ZY, Chalkley RJ, Xu SL. (2022) 15N metabolic labeling quantification workflow in Arabidopsis using Protein Prospector. Front. Plant Sci., DOI: 10.3389/fpls.2022.832562
Frail S, et al. (preprint) Genomes of nitrogen-fixing eukaryotes reveal a non-canonical model of organellogenesis. bioRxiv. DOI: 10.1101/2024.08.27.609708
Park CH, et al. (2022) Deconvoluting signals downstream of growth and immune receptor kinases by phosphocodes of the BSU1 family phosphatases. Nat. Plants. DOI: 10.1038/s41477-022-01167-10.